Effect of Preprocessing and Augmentation Process in Development of a Deep Learning Model for Fusarium Detection in Shallots

Authors

DOI:

https://doi.org/10.23960/jtep-l.v13i2.350-360

Abstract

As the demand for shallot increases, wide-scale cultivation area must be managed efficiently. However, shallot productivity decreases every year because of plant diseases. Fusarium disease has an intensity up to 60% and can affect yield losses up to 50%. This study was conducted to develop the fusarium disease detection system for shallot using deep learning model and analyze the effect of preprocessing and augmentation adjustment. This study used YOLOv5 deep learning algorithm consisting of the following stages: (1) dataset acquisition, (2) dataset annotation, (3) dataset preprocessing and augmentation, (4) dataset training and validation, and (5) model testing and evaluation. A total 9,664 annotated dataset was trained to YOLOv5m pre-trained weights. Based on testing and evaluation results, precision, recall, and mean average precision (mAP) metrics of the model without preprocessing and augmentation were 55.5%; 54%; and 48.3% respectively. Metric values of the model were increased to 57.6%; 58.4%; and 54.1% respectively with adjustment of preprocessing and augmentation combination process. Percentage increase in metrics when compared to the control model for each value of precision, recall, and mAP were 2.1%; 4.4%; and 5.8%. This shows a significant impact on the addition of preprocessing and augmentation processes that match the characteristics of the dataset to increase the value of model performance.

 

Keywords: Augmentation, Deep learning, Fusarium, Shallot.

Author Biographies

  • Yuvicko Gerhaen Purwansya, IPB University
    Agricultural and Biosystem Engineering | Data Analysis and Software Innovation enthusiasm
  • Mohamad Solahudin, IPB University
    Department of Mechanical and Biosystem Engineering, Faculty of Agriculture Engineering and Technology
  • Supriyanto Supriyanto, IPB University
    Department of Mechanical and Biosystem Engineering, Faculty of Agriculture Engineering and Technology

References

Ahmad, A., Saraswat, D., & El Gamal, A. (2023). A survey on using deep learning techniques for plant disease diagnosis and recommendations for development of appropriate tools. Smart Agricultural Technology, 3, 100083. https://doi.org/10.1016/j.atech.2022.100083

Ali, M.M., Bachik, N.A., Muhadi, N., Yusof, T.N.T, & Gomes, C. (2019). Non-destructive techniques of detecting plant diseases: A review. Physiological and Molecular Plant Pathology, 108, 101426. https://doi.org/10.1016/j.pmpp.2019.101426

Atefi, A., Ge, Y., Pitla, S., & Schnable, J. (2021). Robotic technologies for high-throughput plant phenotyping: Contemporary reviews and future perspectives. Frontiers in Plant Science, 12, https://doi.org/10.3389/fpls.2021.611940

Bao, W., Zhu, Z., Hu, G., Zhou, X., Zhang, D., & Yang, X. (2023). UAV remote sensing detection of tea leaf blight based on DDMAYOLO. Computers and Electronics in Agriculture, 205, 107637. https://doi.org/10.1016/j.compag.2023.107637

Bochkovskiy, A., Wang, C.Y., & Liao, H.Y.M. (2020). YOLOv4: Optimal speed and accuracy of object detection. arXiv, 2004, 10934v1. https://doi.org/10.48550/arXiv.2004.10934

Chen, J., Wang, H., Zhang, H., Luo, T., Wei, D., Long, T., & Wang, Z. (2022). Weed detection in sesame fields using a YOLO model with an enhanced attention mechanism and feature fusion. Computers and Electronics in Agriculture, 202, 107412. https://doi.org/10.1016/j.compag.2022.107412

Dang, F., Chen, D., Lu, Y., & Li, Z. (2023). YOLOWeeds: A novel benchmark of YOLO object detectors for multi-class weed detection in cotton production systems. Computers and Electronics in Agriculture, 205, 107655. https://doi.org/10.1016/j.compag.2023.107655

Feng, L., Chen, S., Zhang, C., Zhang, Y., & He, Y. (2021). A comprehensive review on recent applications of unmanned aerial vehicle

remote sensing with various sensors for high-throughput plant phenotyping. Computers and Electronics in Agriculture, 182.

https://doi.org/10.1016/j.compag.2021.106033

Ferentinos, K.P. (2018). Deep learning models for plant disease detection and diagnosis. Computers and Electronics in Agriculture, 145, 311–318. https://doi.org/10.1016/j.compag.2018.01.009

Hanci, F. (2018). A Comprehensive overview of onion production: Worldwide and Turkey. Journal of Agriculture and Veterinary Science, 11(9), 17–27. https://doi.org/10.9790/2380-1109011727

Harvey, C.A., Rakotobe, Z.L., Rao, N.S., Dave, R., Razafimahatratra, H., Rabarijohn, R.H., Rajaofara, H., & MacKinnon, J.L. (2014). Extreme vulnerability of smallholder farmers to agricultural risks and climate change in Madagascar. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1639). https://doi.org/10.1098/rstb.2013.0089

Kim, W.S., Lee, D.H., & Kim, Y.J. (2020). Machine vision-based automatic disease symptom detection of onion downy mildew. Computers and Electronics in Agriculture, 168, 105099. https://doi.org/10.1016/j.compag.2019.105099

Li, R., Wang, R., Xie, C., Chen, H., Long, Q., Liu, L., Zhang, J., Chen, T., Hu, H., Jiao, L., Du, J., & Liu, H. (2022). A multi-branch convolutional neural network with density map for aphid counting. Biosystems

engineering, 213, 148–161. https://doi.org/10.1016/j.biosystemseng.2021.11.020

Liu, Q., Zhang, Y., & Yang, G. (2023). Small unopened cotton boll counting by detection with MRF-YOLO in the wild. Computers and Electronics in Agriculture, 204, 107576. https://doi.org/10.1016/j.compag.2022.107576

Lu, J., Hu, J., Zhao, G., Mei, F., & Zhang, C. (2017). An in-field automatic wheat disease diagnosis system. Computers and Electronics in Agriculture, 142(1), 369–379. https://doi.org/10.1016/j.compag.2017.09.012

Luo, K., Jin, Y., Wen, S., Li, Y., Rong, J., & Ding, M. (2023). Detection and quantification of cotton trichomes by deep learning algorithm. Computers and Electronics in Agriculture, 210, 107936. https://doi.org/10.1016/j.compag.2023.107936

Neupane, K., & Baysal-Gurel, F. (2021). Automatic identification and monitoring of plant diseases using unmanned aerial vehicles: A review. Remote Sensing, 13(19). https://doi.org/10.3390/rs13193841

Redmon, J., Divvala, S., Girshick, R., & Farhadi, A. (2016). You only look once: Unified, real-time object detection. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Las Vegas, NV, USA, 779–788. https://doi.org/10.1109/CVPR.2016.91

Sanaeifar, A., Guindo, M.L., Bakhshipour, A., Fazayeli, H., Li, X., & Yang, C. (2023). Advancing precision agriculture: The potential of deep learning for cereal plant head detection. Computers and Electronics in Agriculture, 209, 107875. https://doi.org/10.1016/j.compag.2023.107875

Shen, Y., Zhou, H., Li, J., Jian, F., & Jayas, D.S. (2018). Detection of stored-grain insects using deep learning. Computers and Electronics in Agriculture, 145, 319–325. https://doi.org/10.1016/j.compag.2017.11.039

Singh, A., Jones, S., Ganapathysubramanian, B., Sarkar, S., Mueller, D., Sandhu, K., & Nagasubramanian, K. (2021). Challenges and opportunities in machine-augmented plant stress phenotyping. Trends in Plant Science, 26(1), 53–69. https://doi.org/10.1016/j.tplants.2020.07.010

Solahudin, M., & Mutawally, F.W. (2020). Identifikasi ganoderma pada tanaman kelapa sawit berbasis reflektansi gelombang multispektral. Jurnal Keteknikan Pertanian, 7(3), 193–200. https://doi.org/10.19028/jtep.07.3.193-200

Solahudin, M., Pramudya, B., Liyantono, L., Supriyanto, S., & Manaf, R. (2015). Gemini virus attack analysis in field of chili (Capsicum Annuum L.) using aerial photography and bayesian segmentation method. Procedia Environmental Sciences, 24, 254–257. https://doi.org/10.1016/j.proenv.2015.03.033

Supyani, Poromarto, S.H., Supriyadi, Permatasari, F.I., Putri, D.H., Putri, D.T., & Hadiwiyono. (2021). Disease intensity of moler and yield losses of shallot cv. Bima caused by Fusarium oxysporum f.sp. cepae in Brebes Central Java. IOP Conference Series: Earth and Environmental Science, 905, 012049. https://doi.org/10.1088/1755-1315/905/1/012049

Susilawati, D.M., Maarif, M.S., Widiatmaka, & Lubis, I. (2019). Evaluasi kesesuaian dan ketersediaan lahan untuk pengembangan komoditas bawang merah di Kabupaten Brebes, Provinsi Jawa Tengah. Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan, 9(2), 507–526. https://doi.org/10.29244/jpsl.9.2.507-526

Wang, C.Y., Bochkovskiy, A., & Liao, H.Y.M. (2023). YOLOv7: Trainable bag-of-freebies sets new state-of-the-art for real-time object detectors. 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), Vancouver, BC, Canada: 7464-7475. https://doi.org/10.1109/CVPR52729.2023.00721

Yang, J., Duan, Y., Liu, X., Sun, M., Wang, Y., Liu, M., Zhu, Z., Shen, Z., Gao, W., Wang, B., Chang, C., & Li, R. (2022). Reduction of banana fusarium wilt associated with soil microbiome reconstruction through green manure intercropping. Agriculture, Ecosystems and Environment, 337, 108065. https://doi.org/10.1016/j.agee.2022.108065

Zhang, F., Ren, F., Li, J., & Zhang, X. (2022). Automatic stomata recognition and measurement based on improved YOLO deep learning model and entropy rate superpixel algorithm. Ecological Informatics, 68, 101521. https://doi.org/10.1016/j.ecoinf.2021.101521

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2024-04-04

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